Proteomics Educational Resources
Tutorials
Scaffold software for complex sample analysis
- Introduction to Scaffold
- Self-Paced Scaffold Tutorial
- Sample Scaffold Data for tutorial (must have free Scaffold Viewer installed to view data)
Workshops
August 30, 2007 - Hands-on Proteomics Database Searching Workshop
- Sample MS data
- Sample MS/MS data (right click and save file to your computer)
February 27, 2007 - Introduction to Proteomics Workshop
Poster Presentations
February 23, 2007 - Two dimensional LC/MS-MS analysis of the Escherichia Coli Proteome: A Comparison of Protein and Peptide Fractionation in the First Dimension
February 12, 2006 - Characterization of the Proteome of Tuberculin Using a Combination of LC-MALDIMS/
MS and LC-ESI-MS/MS
On-line Resources
Colorado Biological Mass Spectrometry Society
Scaffold http://www.proteomesoftware.com
Mascot http://www.matrixscience.com
SEQUEST http://fields.scripps.edu/sequest/index.html
X! Tandem http://www.thegpm.org/TANDEM/index.html
NCBI http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein
Swiss-Prot http://us.expasy.org/sprot/
Various Mass Spec and Proteomics Tutorials http://www.ionsource.com/
Electrospray Ionization Tutorial http://www.newobjective.com/electrospray/index.html
Swiss Proteomics Society Digest (good resource to help keep up on the current literature) http://www.swissproteomicsociety.org/digest/
Gene Ontology Project (GO terms) http://www.geneontology.org/
Review Articles
Prenni, J.E.; Avery, A.C.; Olver, C.S. (2007) "Proteomics: A review and an example using the reticulocyte membrane proteome." Veterinary Clinical Pathology, 36(1) 13-24.
Domon, B. and R. Aebersold (2006). "Mass spectrometry and protein analysis." Science 312 (5771): 212-7.
Lambert, J. P., M. Ethier, et al. (2005). "Proteomics: from gel based to gel free." Analytical Chemistry 77 (12): 3771-3787.
Delahunty, C. and J. R. Yates (2005). "Protein identification using 2D-LC-MS/MS." Methods 35 (3): 248-255.
Steen, H. and M. Mann (2004). "The ABC's (and XYZ's) of peptide sequencing." Nature Reviews Molecular Cell Biology 5 (9): 699-711.
Tyers, M. and M. Mann (2003). "From genomics to proteomics." Nature 422 (6928): 193-197.
Aebersold, R. and M. Mann (2003). "Mass spectrometry-based proteomics." Nature 422 (6928): 198-207.